miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|74514705|gb|DT731031.1|DT731031 GTGGTGAAGAAGGATGGTGAGACTCCATCCTCTTCATCAAAACCTCCTGAAGTCTCTCCTGACAATGAGTTTGAGAAACG
GATCAGACCAGAGGTCATTCCTGCAAATGAGATTGGAGTGAGCTTTGCAGACGTTGGTGCACTAGATGAAATAAAAGAGT
CACTTCAGGAATTAGTCATGCTTCCTCTTCGAAGACCAGACCTCTTTAAAGGTGGACTTCTGAAGCCTTGCAAAGGAATA
CTGCTGTTTGGGCCTCCTGGTACTGGAAAGACAATGCTGGCCAAGGCCATTGCTAATGAGGCAGGAGCTAGCTTTATCAA
TGTTTCCATGTCTACCATCACTTCGAAATGGTTTGGGGAAGATGAGAAGAATGTTAGAGCTTTGTTTTCCCTTGCGGCAA
AGGTCTCACCTACAATTATATTTGTGGATGAGGTCGACAGTATGCTTGGGCAGCGAACCCGAGTTGGGGAGCACGAAGCC
ATGAGAAAGATAAAGAATGAGTTCATGACCCACTGGGATGGGCTGTTGACAAAACCTGGTGAGCAGATCCTTGTTCTTGC
TGCGACGAACAGGCCCTTTGACCTTGATGAAGCAATTATCAGGCGGTTTGAACGCAGGATAATGGTTGGTCTACCAGCGG
TAGAGAACAGAGAAAAAATCTTGAAAACACTTCTGTCAAAGGAGAAGGTTGAAGAGGGACTAAATTTTAAGGAGCTTGCG
ACCATGACAGAAGGATACACTGGAAGTGACCTTAAGAATCTGTGCACAACGGCTGCTTATCGTCCTGTTAGGGAGTTTAT
ACAACGAGAGAGGCTAAAGGACTTGGAG




Most similar to sp|Q7ZZ25|ATD1A_DANRE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q7ZZ25|ATD1A_DANRE ATPase family AAA domain-containing protein
           1-A OS=Danio rerio GN=atad1a PE=2 SV=2
          Length = 380

 Score =  238 bits (606), Expect = 5e-62
 Identities = 118/254 (46%), Positives = 171/254 (67%), Gaps = 1/254 (0%)
 Frame = +1

Query: 67  EFEKRIRPEVIPANEIGVSFADVGALDEIKESLQELVMLPLRRPDLFKGG-LLKPCKGIL 243
           E+E  I   ++    I V++ DV  LDEI   +Q+ V+LP ++  LF G  LL+P KG+L
Sbjct: 74  EYEMNIATLLVDPRSIKVTWRDVAGLDEIISEMQDTVILPFQKRHLFSGSKLLQPPKGVL 133

Query: 244 LFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFSLAAKVSPTIIF 423
           L+GPPG GKT++AKA A  +G  FIN+  ST+T KW+GE +K   A+FSLA K+ P IIF
Sbjct: 134 LYGPPGCGKTLIAKATAKASGCRFINLQASTLTDKWYGESQKLTAAVFSLAVKIQPCIIF 193

Query: 424 VDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKPGEQILVLAATNRPFDLDEAIIR 603
           +DE+DS L  R+ + +HEA   +K +FM+ WDGL T    Q++V+ ATNRP D+D AI+R
Sbjct: 194 LDEIDSFLRNRSSM-DHEATAMMKAQFMSLWDGLDTGENSQVMVMGATNRPQDVDAAILR 252

Query: 604 RFERRIMVGLPAVENREKILKTLLSKEKVEEGLNFKELATMTEGYTGSDLKNLCTTAAYR 783
           R      VGLP    RE+IL+ +LS E +   +N KE+A+ +EGY+GSDLK LC  AA  
Sbjct: 253 RMPTAFHVGLPNAAQREEILRLILSGENLSNAINLKEIASQSEGYSGSDLKELCRDAAMY 312

Query: 784 PVREFIQRERLKDL 825
            VR++++++++K +
Sbjct: 313 RVRDYVRKQQMKQI 326